THE ENR PROTOCOL LIBRARY
The same body. Different bottlenecks. One connected repair sequence.
The protocols from Inflamed organize food, digestion, bile, gut ecology, membranes, protein, minerals, cellular energy, and clearance into one readable system. This page shows what changes from one pathway to another and which biological jobs remain constant.
- 6
- core pathways
- 12
- condition contexts
- 9
- biological jobs
HOW TO READ THIS PAGE
A protocol is an organized sequence, not a promise attached to a diagnosis.
The source begins with six practical pathways, then applies the same body-system logic to conditions and symptom patterns. The condition sections describe biological terrain that may add burden. They do not claim that every case has the same cause.
Product roles remain visible because they are part of the source. Educational architecture remains separate from individualized dosing, diagnosis, medication decisions, and medical treatment.
THE SIX CORE PATHWAYS
Choose a protocol to see its biological sequence.
Each pathway begins with a different need, but all of them follow the same architecture: input, digestion, absorption, transport, membrane and tissue use, clearance, and recovery.
The Standard Inflammation Protocol
Lower the pattern that repeatedly reopens inflammatory work, then restore the material, digestion, clearance, membrane structure, and cellular energy required to finish repair.
- 01Lower the incoming load
Center the food pattern on meat, eggs if tolerated, fish, shellfish, collagen-rich cuts, animal fats, and dairy only when tolerated. Remove refined sugar, processed starch, seed oils, fried oils, additives, grains, legumes, and repeatedly reactive foods.
- 02Stabilize vulnerable meals
Use a controlled meal where sweet coffee, cereal, bars, pastries, skipped meals, and late-day crashes normally enter.
- 03Supply repair and energy
Amino acids provide material for muscle, collagen, gut lining, liver work, and glutathione. Vitamins and minerals support mitochondrial ATP, enzymes, antioxidant defense, and tissue rebuilding.
- 04Rebuild and protect membranes
EPA and DHA support membrane remodeling and resolution chemistry. Lipid-phase antioxidants help protect the structures being rebuilt.
- 05Restore the digestive route
Bitters support digestive preparation. TUDCA supports bile and the liver-gut exit route. Probiotic and phage support is placed at the microbial ecology layer.
- 06Evaluate metabolic command
Iodine is discussed at the thyroid layer only when thyroid history, medications, pregnancy status, nodules, autoimmune patterns, and clinician judgment allow.
Omega-3 Reset
A short, intensive membrane-repletion phase designed to change the stored fat supply used by immune cells, blood vessels, nerves, mitochondria, skin, gut lining, and connective tissue.
- 01Create a defined repletion window
The source uses 90 days because red-blood-cell and tissue membrane patterns change over weeks to months.
- 02Count EPA and DHA
The stated 6,000 mg target refers to combined EPA and DHA, not the total fish-oil weight on the front label.
- 03Remove the competing stream
Reduce seed oils, fried food, chips, crackers, restaurant sauces, mayonnaise, dressings, and fryer foods sharply.
- 04Make absorption possible
Bile and digestive function determine whether the fats are emulsified, absorbed, transported, and delivered.
- 05Protect the incoming fats
EPA and DHA are valuable and fragile. The source places lipid-phase antioxidant, glutathione, selenium, and cellular cofactor support beside them.
- 06Reassess before maintenance
After 90 days, maintenance depends on seafood intake, seed-oil exposure, bile function, tolerance, inflammatory burden, and testing where available.
Two Controlled Meals and a Carnivore Dinner
Use structure instead of starvation: two Chocolate Keto meals during the day and one complete carnivore dinner reduce calories while preserving protein, functional fats, minerals, and repair support.
- 01Control breakfast
Replace cereal, pastry, sweet coffee, a snack bar, or a skipped protein meal with the first controlled meal.
- 02Control lunch or the weakest window
Use the second meal where fast food, bread, chips, processed snacks, or the afternoon crash usually enter.
- 03Finish with a complete repair meal
Build dinner around meat, eggs, fish, shellfish, animal fats, collagen-rich cuts, and appropriate organ foods. The source rejects an under-supplied diet dinner.
- 04Remove appetite escalators
Sweet drinks, desserts, bread, chips, processed snacks, seed-oil sauces, and routine grazing remain outside the structure.
- 05Protect muscle and cellular output
Complete protein remains present. Amino-acid, vitamin, and mineral support is discussed when reserve, digestion, or recovery is weak.
- 06Keep the physical signal
Water, salt, and mineral intake remain steady. Walking and resistance training provide muscle with a reason to stay.
Hormone Support Inside the ENR Protocol
Hormones are presented as a supply, signaling, and clearance system requiring nutritional material, mitochondrial energy, membrane receptors, liver processing, bile, stool clearance, and tissues able to hear the signal.
- 01Supply building material
Complete protein, cholesterol, phospholipids, zinc, selenium, iodine from seafood, choline, glycine, taurine, and fat-soluble nutrients support endocrine biology.
- 02Stabilize glucose and insulin
Reduce the sugar and skipped-meal pattern that can disturb insulin pressure, liver metabolism, SHBG, ovarian signaling, and free-hormone availability.
- 03Build enzymes and energy
Amino acids, B vitamins, minerals, choline, glutathione material, and mitochondrial cofactors support production, receptor function, processing, and repair.
- 04Repair the receptor environment
EPA and DHA support the membrane surface where receptors, transporters, enzymes, and immune sensors are organized.
- 05Move used signals outward
The liver modifies hormone metabolites, bile carries part of the material into the intestine, microbes can alter it, and stool must carry it out.
- 06Evaluate thyroid inputs carefully
Iodine is required to build T4 and T3, but thyroid history, medication, nodules, pregnancy, breastfeeding, and autoimmune patterns change the decision.
The ENR System for the Athlete
Training stresses muscle, tendons, ligaments, mitochondria, glycogen, electrolytes, the nervous system, sleep, digestion, the liver, and inflammatory resolution. The pathway protects adaptation across the whole repair economy.
- 01Choose the version
The performance version supports output and recovery. The body-composition version reduces calories while protecting protein, minerals, appetite, and training capacity.
- 02Lead with dense repair food
Meat, eggs, fish, shellfish, collagen-rich cuts, strategic organ foods, and animal fats supply protein, creatine, minerals, collagen precursors, and structural fats.
- 03Use controlled meals strategically
Place them before or after training, or in busy windows that would otherwise become bars, sweet coffee, fast food, or missed meals.
- 04Protect muscle and connective tissue
Essential amino acids, leucine, glycine, glutathione material, minerals, and collagen chemistry support muscle, tendons, ligaments, and repair reserve.
- 05Power and resolve training
Mitochondrial cofactors support ATP. EPA and DHA support membrane remodeling and resolution chemistry. Lipid antioxidants protect stressed surfaces.
- 06Keep digestion and clearance moving
Higher protein and fat intake still depend on stomach preparation, enzymes, bile, gut ecology, and stool movement.
Support Around Potential Neurological Conditions
Nerves remain living tissue requiring stable fuel, ATP, membrane and myelin material, amino acids, minerals, antioxidant protection, digestion, clearance, sleep, and a calmer immune environment.
- 01Identify the clinical structure
Parkinson's, multiple sclerosis, Charcot-Marie-Tooth disease, diabetic neuropathy, alcohol-related neuropathy, chemotherapy injury, compression, deficiency, and autoimmune disease are not interchangeable.
- 02Stabilize fuel
Reduce the cereal, bread, juice, sweet coffee, dessert, and frequent-snack pattern that creates glucose swings and additional nervous-system stress.
- 03Support cellular energy
Nerves spend ATP maintaining electrical gradients, synapses, long axons, membrane repair, transport, and protein clearance.
- 04Rebuild and protect lipid tissue
DHA supports nervous-system membranes while EPA contributes to inflammatory balance. Lipid antioxidants protect DHA-rich membranes, myelin, retinal tissue, and mitochondria.
- 05Supply antioxidant and protein reserve
Glycine, cysteine, NAC, glutathione material, and complete amino acids support antioxidant defense, muscle reserve, enzymes, transport proteins, and repair.
- 06Reduce gut-liver immune noise
Digestion, microbial ecology, bile, and bowel regularity influence endotoxin pressure, absorption, constipation, medication handling, and inflammatory background.
MODERN CONDITION SUPPORT
The diagnosis is not the terrain around it.
The source asks where extra biological pressure may be making an established condition, symptom pattern, or vulnerable tissue harder to manage. Open a topic to see the lens and its boundary.
01Nervous systemAutism with gut, sensory, sleep, or food-reactivity burden
The extra biological burden that can sit on top of an autistic nervous system, including constipation, restricted eating, sugar swings, sleep disruption, histamine signs, and food reactions.
- Gut discomfort and stool disruption
- Restricted protein intake
- Processed-snack dependence
- Post-meal changes in regulation
Support is aimed at comfort and stability. Autism remains a neurodevelopmental reality and deserves respectful, individualized medical and developmental care.
02Nervous systemADHD and attention instability
The difference between a neurodevelopmental ADHD pattern and symptoms amplified by unstable fuel, poor sleep, gut pressure, low protein, mineral insufficiency, or inflammatory burden.
- Glucose spikes, crashes, and skipped meals
- Stimulant dependence
- Poor sleep and daytime fatigue
- Gut reactions and post-meal fog
This framework does not diagnose ADHD or replace behavioral care, school accommodations, therapy, or medication.
03Nervous systemAnxiety and stress intolerance
How physical alarm signals from blood sugar, caffeine, gut pressure, histamine, sleep debt, thyroid function, inflammation, and low cellular energy can intensify anxiety.
- Shakiness or urgency around glucose drops
- Caffeine and sugar dependence
- Broken sleep
- Histamine, constipation, or gut pressure
Anxiety may have psychiatric, traumatic, medical, medication-related, and biological contributors. Panic, self-harm thoughts, or sudden severe symptoms need immediate care.
04Nervous systemDepression and low-motivation terrain
How low cellular energy, poor sleep, unstable glucose, low protein, inflammation, gut disturbance, nutrient depletion, and thyroid dysfunction can reduce reserve.
- Fatigue and slowed thinking
- Irregular low-protein meals
- Poor sleep and low activity
- Digestive, thyroid, or alcohol burden
Depression is serious. Psychotherapy, medication, crisis support, and medical evaluation remain available. Suicidal thoughts require urgent help.
05Nervous systemOCD and compulsive intensity
Physical conditions that may raise nervous-system intensity, reduce inhibitory control, impair sleep, or make an established obsessive-compulsive pattern harder to manage.
- Sleep loss and constant alert chemistry
- Sugar and caffeine swings
- Gut inflammation and histamine
- Low protein, minerals, or omega-3 status
Evidence-based OCD therapy and appropriate medication remain central. Nutrition support is an adjunct around the person.
06Energy + tissueChronic fatigue and low resilience
Fatigue across fuel delivery, mitochondrial ATP, protein reserve, minerals, sleep, thyroid function, inflammation, liver burden, gut ecology, and repeated recovery work.
- Waking unrefreshed
- Post-meal or activity crashes
- Low protein and muscle reserve
- Digestive and thyroid symptoms
Fatigue can reflect anemia, infection, sleep apnea, heart, lung, endocrine, medication, or other disease. Persistent or worsening fatigue needs a workup.
07Energy + tissueBrain fog and cognitive fatigue
Cognitive clarity as an energy, circulation, glucose, sleep, digestion, histamine, inflammation, hydration, and membrane problem.
- Fog after meals or glucose crashes
- Short or fragmented sleep
- Constipation and food reactions
- Low protein, omega-3, fluid, or minerals
New confusion, sudden speech or vision change, one-sided weakness, severe headache, fainting, or rapidly worsening cognition needs urgent evaluation.
08Digestion + immuneGut disorders and food-reactivity patterns
Food through chewing, stomach acid, enzymes, bile, microbial fermentation, the intestinal border, portal blood, the liver, and stool.
- Bloating, reflux-like pressure, or nausea
- Constipation, diarrhea, greasy or pale stool
- Food reactions and post-meal fatigue
- Weak protein or fat digestion
Bleeding, black stool, persistent vomiting, severe pain, jaundice, fever, dehydration, progressive swallowing trouble, or unexplained weight loss requires care.
09Digestion + immuneHistamine intolerance and mast-cell-type reactivity
Total histamine load across food age, leftovers, fermentation, microbial production, gut-barrier irritation, liver clearance, medications, allergies, and mast-cell signaling.
- Flushing, itching, hives, headaches, or heat
- Reactions to aged or leftover food
- Reflux, diarrhea, sleep disruption, or rapid heartbeat
- Constipation, dysbiosis, or alcohol sensitivity
Trouble breathing, throat swelling, fainting, or rapidly progressing allergic symptoms are emergencies.
10Digestion + immuneAutoimmune terrain
The terrain around diagnosed autoimmune disease: gut-barrier pressure, microbial alarm, glucose and insulin load, damaged fats, nutrient reserve, sleep, liver clearance, and resolution capacity.
- Persistent inflammatory burden
- Gut symptoms and food reactivity
- Poor sleep and low repair material
- Processed-food, alcohol, and seed-oil load
Nutrition support does not replace specialty care, disease monitoring, or prescribed immune therapy. Medication changes belong with the treating clinician.
11Digestion + immuneSkin inflammation
The gut-liver-skin axis and skin as barrier tissue built from protein and fat, supplied by blood, and influenced by glucose, hormones, histamine, microbial signals, bile, stool, and membrane quality.
- Acne, eczema-type irritation, flushing, or itching
- Sugar, insulin, or dairy-related changes
- Histamine load and constipation
- Dryness, poor healing, or low omega-3 supply
Infection, severe rash, blistering, rapid spread, eye or mouth involvement, medication reactions, and autoimmune skin disease need appropriate care.
12Energy + tissueJoint stiffness and chronic aches
Joint and connective tissue across collagen, cartilage, tendons, fascia, glycation, omega-3 resolution chemistry, protein, minerals, sleep, metabolic burden, and mechanical demand.
- Morning stiffness and tendon irritation
- High sugar and glycation pressure
- Low protein or weak digestion
- Low omega-3, poor sleep, or metabolic syndrome
Hot or suddenly swollen joints, fever, severe injury, progressive weakness, suspected gout, infection, autoimmune arthritis, or structural disease requires evaluation.
THE NON-NEGOTIABLE BOUNDARY
Educational protocols cannot see the person standing in front of them.
A page cannot review diagnoses, laboratory values, medication interactions, pregnancy status, surgical timing, allergy history, gallbladder anatomy, kidney function, liver function, or the reason a symptom has changed. Those details determine whether a protocol element is appropriate.
Do not replace care
Do not stop or change prescriptions, hormone therapy, thyroid medication, neurologic treatment, immune therapy, psychiatric care, or disease monitoring from this page.
Review focused doses
High-dose omega-3, iodine, bile-support compounds, and complex supplement combinations need medication and condition screening.
Investigate serious symptoms
Chest pain, severe shortness of breath, fainting, new neurologic symptoms, jaundice, black or bloody stool, severe abdominal pain, or rapidly worsening symptoms require prompt evaluation.
Use the right professional
Diagnosis, laboratory interpretation, prescription decisions, and monitoring belong with a licensed clinician who knows the person and can follow the response.
These protocols describe the biological framework presented in Ian Miller's writing. They are not intended to diagnose, treat, cure, or prevent disease, and they do not create a clinician-patient relationship.
UNDERSTAND THE BIOLOGY FIRST
See why inflammatory repair opens and what keeps the worksite from closing.
The Inflammation Cycle explains the repair sequence behind these protocols. The research library then follows each formula from label to digestion, transport, tissue use, evidence, and safety.